Chemical and Genomic Methods in Nucleic Acid Biology

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Gebonden, blz. | Engels
Elsevier Science | 2024
ISBN13: 9780443297243
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Elsevier Science e druk, 2024 9780443297243
Onderdeel van serie Methods in Enzymology
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Chemical and Genomic Methods in Nucleic Acid Biology, Volume 704 highlights new advances in the field of nucleic acids, with this new volume presenting interesting chapters written by an international board of authors. Specific chapters in this new release include A real-time FRET-based biochemical assay for DNA deaminase enzymology and inhibition, DEER spectroscopy to probe DNA wrapping by protein complexes, PAR-dCLIP: Enhancing PhotoActivatable Ribonucleoside analog-enhanced CrossLinking and Immunoprecipitation through capture of bound 5’ terminal RNA fragments, Site-specific targeting of transgene cDNA insertion, Simultaneous Profiling of the RNA Targets of Two RNA-Binding Proteins Using TRIBE-STAMP, and much more.

Additional chapters cover Ensemble FRET Approach to Directly and Continuously Monitor Protein? DNA Interactions, Utilizing nuclear extracts to characterize protein-DNA interactions at the single-molecule level, RNA-Guided Protease Activation in CRISPR-Cas, Activity-based profiling of RNA modifying enzymes, Purification of Cas9 and Cas12a for Peptide-Assisted Genome Editing, Studying the intersection of nucleoside modifications and SARS-CoV-2 RNA-dependent RNA transcription using an in vitro reconstituted system, and more.

Specificaties

ISBN13:9780443297243
Taal:Engels
Bindwijze:Gebonden

Inhoudsopgave

<u>MIE 704: Chemical and genomic methods in nucleic acid biology</u><br>1. A real-time FRET-based biochemical assay for DNA deaminase enzymology and inhibition<br>Hideki Aihara<br>2. DEER spectroscopy to probe DNA wrapping by protein complexes<br>Edwin Antony<br>3. PAR-dCLIP: Enhancing PhotoActivatable Ribonucleoside analog-enhanced CrossLinking and Immunoprecipitation through capture of bound 5&rsquo; terminal RNA fragments<br>Manuel Ascano<br>4. Site-specific targeting of transgene cDNA insertion<br>Kathleen collins<br>5. Simultaneous Profiling of the RNA Targets of Two RNA-Binding Proteins Using TRIBE-STAMP<br>Mathieu Flamand<br>6. Ensemble FRET Approach to Directly and Continuously Monitor Protein?DNA Interactions<br>Mark Hedglin<br>7. Utilizing nuclear extracts to characterize protein-DNA interactions at the single-molecule level<br>Bennett Van Houten<br>8. RNA-Guided Protease Activation in CRISPR-Cas<br>Ailong Ke<br>9. Activity-based profiling of RNA modifying enzymes<br>Ralph Kleiner<br>10. Purification of Cas9 and Cas12a for Peptide-Assisted Genome Editing<br>Rahul M. Kohli<br>11. Studying the intersection of nucleoside modifications and SARS-CoV-2 RNA-dependent RNA transcription using an in vitro reconstituted system<br>Kristin Koutmou<br>12. Measuring protein stoichiometry with single-molecule imaging in cell-free extracts<br>Joseph Loparo<br>13. Simultaneous probing of transcription, G-quadruplex, and R-loop<br>Sua Myong<br>14. A user guide to RT-based mapping of RNA modifications<br>Sigrid Nachtergaele<br>15. AP Endonuclease 1: Biological updates and advances in activity analysis<br>Robert W. Sobol<br>16. Strand-specific PCR-competitive replication and adduct bypass assay for assessing how DNA adducts perturb DNA replication in mammalian cells<br>Yinsheng Wang<br>17. Expression, purification, and biochemical analysis of the RNA-DNA Hybrid Helicase Sen1/SETX from Chaetomium thermophilum<br>R. Scott Williams
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        Chemical and Genomic Methods in Nucleic Acid Biology